FLCore - Core Package of FLR, Fisheries Modelling in R
Core classes and methods for FLR, a framework for fisheries modelling and management strategy simulation in R. Developed by a team of fisheries scientists in various countries. More information can be found at <http://flrproject.org/>.
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fisheriesflrfisheries-modelling
9.05 score 17 stars 25 dependents 1.2k scripts 8 downloads
ggplotFL - Using ggplot2 in FLR
Using ggplot2 for FLR. Provides (1) overloaded ggplot methods for various FLR classes, (2) ggplot-based versions of standard plots in the FLCore package, and (3) new geoms for using FLR objects.
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visualizationggplot2fisheriesflr
7.89 score 4 stars 14 dependents 622 scripts
FLasher - Projection and Forecasting of Fish Populations, Stocks and Fleets
Projection of future population and fishery dynamics is carried out for a given set of management targets. A system of equations is solved, using Automatic Differentation (AD), for the levels of effort by fishery (fleet) that will result in the required abundances, catches or fishing mortalities.
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forecastfisheriesflrcpp
7.50 score 2 stars 7 dependents 312 scripts
FLasher - Projection and Forecasting of Fish Populations, Stocks and Fleets
Projection of future population and fishery dynamics is carried out for a given set of management targets. A system of equations is solved, using Automatic Differentation (AD), for the levels of effort by fishery (fleet) that will result in the required abundances, catches or fishing mortalities.
Last updated
forecastfisheriesflrcpp
7.34 score 2 stars 7 dependents 217 scripts
FLBRP - Reference Points for Fisheries Management
Calculates a range of biological reference points based upon yield per recruit and stock recruit based equilibrium calculations. These include F based reference points like F0.1, FMSY and biomass based reference points like BMSY.
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reference pointsfisheriesflrcpp
6.80 score 2 stars 6 dependents 389 scripts
FLBRP - Reference Points for Fisheries Management
Calculates a range of biological reference points based upon yield per recruit and stock recruit based equilibrium calculations. These include F based reference points like F0.1, FMSY and biomass based reference points like BMSY.
Last updated
reference pointsfisheriesflrcpp
6.62 score 2 stars 6 dependents 386 scripts
mse - Tools for Running Management Strategy Evaluations using FLR
A set of functions and methods to enable the development and running of Management Strategy Evaluation (MSE) analyses, using the FLR packages and classes and the a4a methods and algorithms.
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simulationmsefisheriesflra4amanagement-strategy-evaluation
6.11 score 4 stars 4 dependents 177 scripts
mse - Tools for Running Management Strategy Evaluations using FLR
A set of functions and methods to enable the development and running of Management Strategy Evaluation (MSE) analyses, using the FLR packages and classes and the a4a methods and algorithms.
Last updated
simulationmsefisheriesflra4amanagement-strategy-evaluation
6.08 score 4 stars 4 dependents 178 scriptsspict - Stochastic surplus Production model in Continuous-Time (SPiCT)
Fits a surplus production model to fisheries catch and biomass index data.
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cpp
5.41 score 144 scripts
FLAssess - Generic Classes and Methods for Stock Assessment Models
A generic set of classes for stock assessment models are provided here. Individual assessment packages should extend the basic classes.
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cpp
4.76 score 3 dependents 323 scripts
ss3om - Tools for Conditioning Fisheries Operating Models Using Stock Synthesis 3
Tools for loading Stock Synthesis (SS3) models into FLR. Used in conditioning of Operating Models based on SS3 by considering structural uncertainty in input parameters and assumptions. A grid of SS3 runs can be created and results loaded on objects of various FLR classes.
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fisheriesss3flr
4.53 score 84 scripts
FLXSA - eXtended Survivor Analysis for FLR
Calculates stock numbers and fishing mortality at age from commercial catch data and one or more indices of abundance suing the method in Darby and Flatman (1994) and Shepherd (1999).
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cpp
4.14 score 2 stars 1 dependents 115 scripts
FLFishery - Classes and Methods for Simpler Fleet/Fishery Modelling
A set of classes and methods for modelling of fleet dynamics. Fisheries are groups of vessels sharing an effort time series, with static or changing spatio-temporal patterns in selectivity.
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fisheriesflr
3.84 score 8 dependents 19 scriptsFLFleet - Classes and Methods for Fleets and Metiers
This package contains classes and methods for modelling of fishing fleets and their activity on multiple fish stocks.
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3.19 score 1 stars 1 dependents 103 scripts
a4adiags - Additional Diagnostics for FLa4a stock Assessment Models
A series of extra diagnostics for the FLa4a model, including prediction skill through restrospective prediction of model inputs and runs tests. Contains ggplot-based plot funtions of diagnostics outputs.
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2.70 score 8 scripts
AAP - Aarts and Poos Stock Assessment Model that Estimates Bycatch
FLR version of Aarts and Poos stock assessment model.
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2.70 score 8 scripts
wmrkdown - A set of templates to generate WUR and WMR documents using (R)markdown
A series of templates are provided that allow using (R)markdown and pandoc to generate documents following the styles required by Wageningen University and Research (WUR) nd Wageningen Marine Research (WMR).
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2.30 score 1 scriptsicesdown - ICES Rmarkdown tools
A collection of rmarkdown and pandoc versions of various ICES templates can be found here.
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1.70 score 1 scripts